PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G096200.1
Common NameB456_012G096200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 184aa    MW: 21140.1 Da    PI: 10.6054
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G096200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP223.61.3e-0788119953
                 AP2   9 dkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                         ++++  Wv     +        ++lg+f++ae Aa a+++a+ + 
  Gorai.012G096200.1  88 RHSTRNWV-----W--------VWLGTFDSAEAAASAYDQAAFST 119
                         33467777.....7........9******************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003808.6E-860135IPR001471AP2/ERF domain
PROSITE profilePS5103213.14263129IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-1087131IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-1389130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MEEFFQFHSS STSPDFSPES LFRSPSVETL SGRWDELLLN FNDFEAMVWV GGYGGGLGSV  60
QERRKGRRCR IGYCQTGRVT QGRESLRRHS TRNWVWVWLG TFDSAEAAAS AYDQAAFSTK  120
GLSAMLNFPV EVVRESLRSI KFRCDQVCSP VLALKRRHWI GKTRQIFNLI KFVYLPRPKR  180
RNF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012477474.15e-44PREDICTED: ethylene-responsive transcription factor 1B-like
TrEMBLA0A0D2V4B01e-134A0A0D2V4B0_G
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.11e-15ethylene response factor 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]